Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2921
nitrogen source	Propiolactam (N)	-4.6
nitrogen source	Butyrolactam (N)	-4.4
nitrogen source	Butyrolactam (N)	-4.4
nitrogen source	Propiolactam (N)	-3.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9
phage	P. put PUT 10 MOI 0.1	-0.8
carbon source	Valerolactone (C)	-0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.6
phage	P. putida South MOI 10	-0.6
phage	P. put South MOI 1	-0.6
carbon source	L-Phenylalanine 5 mM (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
carbon source	Acetate Carbon Source (20mM)	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	+0.5
stress	Growth with Chloride 500 mM	+0.5
temperature	Growth at 25C	+0.5
carbon source	ferulate (C); with MOPS	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
no stress control	Growth with no stress	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
		remove PP_2921