Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2920
nitrogen source Butyrolactam (N) -4.7
nitrogen source Propiolactam (N) -4.4
nitrogen source Butyrolactam (N) -4.3
nitrogen source Propiolactam (N) -3.1
nitrogen source 2,6-diaminopimelic (N) -0.8
pH Growth at pH7 and (C) D-Glucose -0.7
nitrogen source Valerolactam (N) -0.6
nitrogen source Valerolactam (N) -0.6
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.6
carbon source 5-Aminovaleric 10 mM (C) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5
pH Growth at pH6 and (C) D-Glucose -0.5
phage P. putida Missley MOI 0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5
temperature shift Temperature shift 30_to_25 -0.5
pH Valerolactone (C) pH 6.5 -0.5
nitrogen source Caprolactam (N) -0.5
pH pH 7 +0.5
pH Growth at pH7 and (C) Trisodium citrate +0.5
phage PUT8 MOI 0.1 +0.5
pH Growth at pH7 and (C) D-Glucose +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6
nitrogen source D-2-Aminobutyric (N) +0.6
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.7
carbon source D-Glucose (C) +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7
phage P. putida Sci small MOI 0.1 +0.8
nitrogen source D-2-Aminobutyric (N) +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.1
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PP_2920