Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2890
nitrogen source	Propandiamine (N)	-1.9
phage	P. putida Sci small MOI 0.1	-1.4
phage	P. putida Sci small MOI 0.1	-1.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-1.1
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.0
carbon source	3-methyl-1-butanol (C)	-0.9
temperature shift	Temperature shift 30_to_25; with MOPS	-0.8
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.8
pH	pH 4	-0.7
stress	R2A with Fusaric 240 ug/mL	-0.7
carbon source	ferulate (C); with MOPS	-0.7
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.7
carbon source	3-methyl-1-butanol (C)	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
phage	P. putida South MOI 10	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	-0.6
carbon source	pyruvate (C)	+0.6
temperature shift	Temperature shift 30_to_10; with MOPS	+0.6
temperature	Growth at 30C	+0.6
temperature shift	Temperature shift 30_to_21; with MOPS	+0.6
nitrogen source	nitrite (N)	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x	+0.7
carbon source	D-Glucose (C)	+0.7
phage	PUT 8 MOI 1	+0.7
nitrogen source	Ammonium chloride (N)	+0.7
nitrogen source	2,6-diaminopimelic (N)	+0.7
nitrogen source	NAG (N); with MOPS	+0.8
		remove PP_2890