Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2887
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.5
pH	Growth at pH6 and (C) D-Glucose	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.0
phage	P. putida PUT 7 MOI 1	-0.9
phage	P. putida Missley MOI 0.1	-0.9
nitrogen source	NAG (N); with MOPS	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-0.8
nitrogen source	Urea (N); with MOPS	-0.7
nitrogen source	nitrate (N)	-0.6
no stress control	Growth with no stress	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.6
pH	Growth at pH9 and (C) D-Glucose	-0.6
nitrogen source	NAG (N); with MOPS	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.6
stress	Growth with Chloride 500 mM; with MOPS	-0.5
carbon source	ferulate (C); with MOPS	-0.5
carbon source	ferulate (C); with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.5
carbon source	Nonanoic (C)	-0.5
carbon source	D-Glucose (C)	-0.5
phage	P. put PUT 10 MOI 10	-0.5
phage	P. putida Sci small MOI 0.1	-0.5
temperature shift	Temperature shift 30_to_21; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
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