Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2866
pH	Growth at pH6 and (C) D-Glucose	-1.4
phage	P. putida PUT 7 MOI 1	-1.1
phage	P. putida Sci small MOI 0.1	-1.1
pH	pH 9	-1.0
phage	PUT 8 MOI 1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8
nitrogen source	nitrate (N)	-0.7
nitrogen source	2,6-diaminopimelic (N)	-0.6
carbon source	L-Leucine (C)	-0.6
carbon source	Nonanoic (C)	-0.6
carbon source	5-Aminovaleric 10 mM (C)	-0.6
carbon source	1,3-Butandiol (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6
carbon source	Valerolactone (C)	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
pH	Valerolactone (C) pH 6.5	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
no stress control	Growth with no stress	+0.5
carbon source	ferulate (C); with MOPS	+0.6
nitrogen source	NAG (N)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6
stress	R2A with Fusaric 480 ug/mL	+0.6
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6
no stress control	Growth with no stress	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7
carbon source	ferulate (C); with MOPS	+0.8
temperature shift	Temperature shift 30_to_21; with MOPS	+0.8
phage	P. putida Sci small MOI 0.1	+0.8
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