Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2840
phage	P. putida Sci small MOI 0.1	-2.6
carbon source	ferulate (C); with MOPS	-1.8
nitrogen source	2,6-diaminopimelic (N)	-1.6
phage	P. putida Sci Big MOI 0.1	-1.1
pH	pH 8	-1.1
temperature shift	Temperature shift 30_to_21; with MOPS	-1.0
nitrogen source	Urea (N)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.9
temperature shift	Temperature shift 10_to_21; with MOPS	-0.9
nitrogen source	Urea (N)	-0.8
temperature shift	Temperature shift 10_to_25; with MOPS	-0.8
nitrogen source	Ammonium chloride (N)	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.8
temperature shift	Temperature shift 30_to_21; with MOPS	-0.7
temperature shift	Temperature shift 30_to_25	-0.7
pH	Growth at pH9 and (C) D-Glucose	-0.6
temperature shift	Temperature shift 10_to_25; with MOPS	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
temperature shift	Temperature shift 10_to_34; with MOPS	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
carbon source	D-Glucose (C)	-0.6
pH	Growth at pH9 and (C) D-Glucose	-0.6
carbon source	Tween 20 (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
carbon source	L-Proline (C)	+0.6
carbon source	L-Lysine (C)	+0.6
carbon source	Acetate Carbon Source (20mM)	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9
		remove PP_2840