Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2803
pH	Growth at pH7 and (C) D-Glucose	-1.0
phage	P. putida Missley MOI 0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7
carbon source	Trisodium citrate (C)	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
nitrogen source	nitrate (N)	-0.6
carbon source	ferulate (C); with MOPS	-0.6
carbon source	Beta-alanine (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
nitrogen source	L-Lysine (N)	-0.6
carbon source	BC Lignin Sorghum 20 vol% (C)	-0.5
carbon source	L-Isoleucine (C)	-0.5
reactor_pregrowth	Adaptation in M9 media timecourse 4; day 2	-0.5
temperature shift	Temperature shift 10_to_25; with MOPS	+0.5
temperature shift	Temperature shift 30_to_21; with MOPS	+0.5
carbon source	Tween 20 (C)	+0.5
carbon source	carbon source Glycerol 108.6 mM	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6
nitrogen source	nitrogen source nitrite 1mM	+0.6
nitrogen source	nitrogen source nitrite 0.5mM	+0.6
temperature shift	Temperature shift 10_to_21; with MOPS	+0.6
carbon source	Octanoic (C)	+0.6
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
pH	pH 8	+0.7
phage	P. putida Sci small MOI 0.1	+0.7
carbon source	carbon source D-Glucose 55.5 mM	+0.7
		remove PP_2803