Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2795
carbon source	4-Hydroxyvalerate (C) (40mM)	-5.0
carbon source	4-Hydroxyvalerate (C) (40mM)	-4.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.8
carbon source	D-Glucose (C)	-1.2
nitrogen source	nitrogen source nitrite 1mM	-1.0
pH	Growth at pH8 and (C) D-Glucose	-1.0
pH	Growth at pH9 and (C) D-Glucose	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.9
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.9
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.8
carbon source	ferulate (C); with MOPS	-0.8
phage	P. putida Sci small MOI 0.1	-0.7
carbon source	L-Leucine (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.7
carbon source	1,3-Butandiol (C)	-0.7
phage	P. putida Missley MOI 0.1	-0.7
stress	Growth with Chloride 500 mM; with MOPS	-0.7
carbon source	carbon source Bisabolol 45 mM	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
phage	P. putida Sci Big MOI 0.1	+0.6
temperature shift	Temperature shift 30_to_25; with MOPS	+0.6
nitrogen source	nitrate (N)	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.7
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.7
phage	P. putida South MOI 0.1	+0.7
phage moi 100	Time6-phageFRS	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3
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