Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2779
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.3
carbon source	D-Glucose (C); with MOPS	-0.8
temperature	Growth at 25C; with MOPS	-0.8
temperature shift	Temperature shift 30_to_25; with MOPS	-0.8
no stress control	Growth with no stress	-0.7
pH	Growth at pH8 and (C) D-Glucose	-0.7
nitrogen source	nitrate (N)	-0.6
temperature shift	Temperature shift 10_to_21; with MOPS	-0.6
stress	Growth with Chloride 500 mM; with MOPS	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
nitrogen source	3,5-Dinitrosalicylic (N)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.5
temperature	Growth at 30C; with MOPS	-0.5
temperature shift	Temperature shift 30_to_25	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
temperature	Growth at 30C	-0.5
temperature shift	Temperature shift 30_to_34; with MOPS	-0.5
temperature	Growth at 30C; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.5
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	-0.5
temperature shift	Temperature shift 10_to_25; with MOPS	-0.5
carbon source	Valerolactone (C)	+0.5
carbon source	Valerolactone (C)	+0.5
stress	1-Pentanol 0.3 vol%	+0.5
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