Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2734
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9
carbon source carbon source 4-vinylphenol 0.01 mM -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8
carbon source Quinic Acid (C) -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7
carbon source 3-Hydroxydecanoic (C) -0.7
stress Geraniol 1 vol% -0.6
carbon source Ethyl decanoate (C) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6
nitrogen source NAG (N); with MOPS -0.6
phage P. putida PUT 7 MOI 1 -0.5
temperature shift Temperature shift 30_to_25; with MOPS -0.5
carbon source D-Fructose (C) -0.5
pH Growth at pH6 and (C) Trisodium citrate -0.5
carbon source Mucic (C) -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5
temperature Growth at 25C; with MOPS +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5
carbon source Valerolactone (C) +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5
pH Growth at pH6 and (C) Trisodium citrate +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6
no stress control Growth with no stress +0.6
temperature Growth at 25C +0.6
temperature Growth at 25C +0.6
nitrogen source nitrate (N) +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6
dilutelb LB 0.1x with 55.5 mM D-Glucose +0.6
pH Growth at pH6 and (C) D-Glucose +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8
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PP_2734