Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2716
phage	P. putida Missley MOI 0.1	-4.9
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.3
nitrogen source	nitrogen source nitrite 1mM	-1.2
no phage control	Time6-nophage	-1.1
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-1.1
nitrogen source	nitrogen source nitrate 20mM	-1.0
carbon source	D-Lysine 10 mM (C)	-1.0
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.9
carbon source	D-Glucose (C) with 20AA_mix_minus_Asn	-0.9
phage	P. putida South MOI 10	-0.9
carbon source	D-Glucose (C)	+0.9
pH	Growth at pH6 and (C) D-Glucose	+0.9
carbon source	Succinic Acid (C)	+0.9
temperature shift	Temperature shift 30_to_21; with MOPS	+1.0
pH	Growth at pH9 and (C) D-Glucose	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0
temperature	Growth at 25C	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+1.1
nitrogen source	Urea (N); with MOPS	+1.1
pH	Growth at pH8 and (C) Trisodium citrate	+1.1
pH	Growth at pH7 and (C) D-Glucose	+1.1
pH	Growth at pH6 and (C) D-Glucose	+1.2
phage	P. putida PUT 7 MOI 1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3
temperature shift	Temperature shift 10_to_25; with MOPS	+1.3
carbon source	acetate (C)	+1.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+1.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5
carbon source	ferulate (C); with MOPS	+1.5
nitrogen source	D-2-Aminobutyric (N)	+1.8
		remove PP_2716