Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2698
carbon source	carbon source Bisabolol 45 mM	-1.1
pH	Growth at pH6 and (C) D-Glucose	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
pH	Growth at pH8 and (C) D-Glucose	-0.8
carbon source	carbon source D-Glucose 55.5 mM	-0.7
carbon source	carbon source Bisabolene 48.9 mM	-0.7
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
nitrogen source	Urea (N)	-0.6
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.6
micoeukaryotes	C.elegans, mixed culture-2	-0.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
carbon source	Trisodium citrate (C)	-0.5
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.5
nitrogen source	Choline chloride (N)	-0.5
stress	R2A with Fusaric 480 ug/mL	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
phage	P. putida South MOI 10	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.5
phage	P. putida Sci Big MOI 0.1	+0.5
phage	P. putida PUT 7 MOI 1	+0.5
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
phage	P. putida Sci small MOI 0.1	+0.9
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