Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2658
temperature shift	Temperature shift 30_to_21; with MOPS	-1.5
stress	R2A with Fusaric 480 ug/mL	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2
nitrogen source	Ammonium chloride (N)	-1.1
temperature shift	Temperature shift 10_to_25; with MOPS	-1.0
nitrogen source	NAG (N); with MOPS	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8
temperature	Growth at 30C; with MOPS	-0.8
temperature shift	Temperature shift 30_to_25; with MOPS	-0.8
nitrogen source	2,6-diaminopimelic (N)	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8
stress	Growth with Chloride 500 mM; with MOPS	-0.8
pH	Growth at pH6 and (C) D-Glucose	-0.8
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.7
temperature	Growth at 34C	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7
nitrogen source	DL-3-Aminoisobutyric (N)	+0.7
pH	pH 9	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.7
carbon source	2,3-Butanediol (C)	+0.8
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.8
pH	Growth at pH7 and (C) D-Glucose	+0.8
nitrogen source	D-2-Aminobutyric (N)	+0.9
phage	P. putida Sci small MOI 0.1	+0.9
phage	P. putida Missley MOI 0.1	+1.0
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM	+1.0
phage	P. putida Sci small MOI 0.1	+1.8
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