Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2639
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.5
nitrogen source	Propiolactam (N)	-0.5
phage	P. putida Sci small MOI 0.1	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
carbon source	Nonanoic (C)	-0.4
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.4
stress	Growth with Chloride 500 mM; with MOPS	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
carbon source	Myristic (C)	-0.4
pH	pH 4	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.3
phage	P. putida South MOI 0.1	+0.3
phage	P. put South MOI 10	+0.4
carbon source	DL-3-Hydroxybutyric (C)	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	1,3-Hexanediol (C)	+0.4
stress	3-methyl-3-butenol (pure) 0.25 vol%	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	+0.4
nitrogen source	Propandiamine (N)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
phage	P. putida South MOI 1	+0.5
pH	Valerolactone (C) pH 6.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
nitrogen source	Propandiamine (N)	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8
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