Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2585
temperature shift	Temperature shift 10_to_25; with MOPS	-1.2
phage	P. putida Sci Big MOI 0.1	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.1
carbon source	ferulate (C); with MOPS	-1.1
nitrogen source	nitrite (N)	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.0
pH	Growth at pH7 and (C) D-Glucose	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
stress	R2A with Fusaric 240 ug/mL	-0.9
nitrogen source	nitrate (N)	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
pH	Growth at pH9 and (C) D-Glucose	-0.9
carbon source	4-Aminobutyric 10 mM (C)	-0.9
temperature	Growth at 30C	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8
pH	Growth at pH8 and (C) D-Glucose	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.8
nitrogen source	2,6-diaminopimelic (N)	-0.8
carbon source	ferulate (C); with MOPS	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.7
carbon source	Glucose (C) (20mM)	-0.7
pH	Growth at pH8 and (C) Trisodium citrate	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
carbon source	Trisodium citrate (C)	-0.6
carbon source	L-Lysine (C)	-0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.7
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
carbon source	4-Methyl-2-oxopentanoic (C)	+0.9
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