Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2569
phage P. putida Missley MOI 0.1 -0.7
nitrogen source 2,6-diaminopimelic (N) -0.6
carbon source Trisodium citrate (C) -0.5
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.5
phage P. putida Sci small MOI 0.1 -0.5
nitrogen source nitrate (N) -0.5
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) -0.4
nitrogen source Propandiamine (N) -0.4
nitrogen source nitrite (N) -0.4
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4
nitrogen source nitrate (N) -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4
carbon source 4-Methyl-2-oxopentanoic (C) +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.4
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
temperature shift Temperature shift 30_to_10; with MOPS +0.4
nitrogen source NAG (N); with MOPS +0.4
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
carbon source carbon source Bisabolene 48.9 mM +0.5
carbon source carbon source 3-O-methyl-glucose 10 mM +0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.5
carbon source carbon source 4-vinylphenol 0.01 mM +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7
phage P. putida Sci Big MOI 0.1 +0.7
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PP_2569