Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2554
carbon source	Quinic Acid (C)	-2.7
carbon source	Quinic Acid (C)	-2.5
nitrogen source	nitrogen source nitrite 0.5mM	-0.9
phage	P. putida Sci small MOI 0.1	-0.7
phage	P. putida PUT 7 MOI 1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
carbon source	ferulate (C); with MOPS	-0.5
phage	P. putida Sci small MOI 0.1	-0.5
stress	Growth with Chloride 200 mM; with MOPS	-0.5
pH	Valerolactone (C) pH 6.5	-0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.4
carbon source	DL-2-Aminoadipic 10 mM (C)	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
nitrogen source	nitrite (N)	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
carbon source	Mucic (C)	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.4
carbon source	Delta-Undecalactone (C)	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.4
carbon source	Trisodium citrate (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
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