Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_2509
temperature shift	Temperature shift 30_to_25; with MOPS	-2.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.5
carbon source	Myristic (C)	-1.5
nitrogen source	Urea (N); with MOPS	-1.2
nitrogen source	nitrate (N)	-1.1
carbon source	p-Coumaric (C)	-1.1
carbon source	D-Glucose (C); with MOPS	-1.1
phage	P. putida South MOI 10	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-1.1
pH	pH 5	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
carbon source	Valeric (C)	-0.9
temperature shift	Temperature shift 30_to_25; with MOPS	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	-0.9
carbon source	D-Glucose (C)	-0.9
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.9
carbon source	Nonanoic (C)	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9
pH	Growth at pH7 and (C) D-Glucose	-0.8
carbon source	Acetate Carbon Source (20mM)	-0.8
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.8
nitrogen source	nitrate (N)	+0.9
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.9
mixed community control	Putida_ML5X alone	+0.9
nitrogen source	nitrogen source nitrate 5mM	+0.9
nitrogen source	2,6-diaminopimelic (N)	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
		remove PP_2509