Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_2497
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-3.6
nitrogen source	Ammonium chloride (N)	-3.5
pH	pH 9	-3.0
stress	Growth with Chloride 500 mM; with MOPS	-2.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.4
phage	P. put PUT 10 MOI 10	-1.4
temperature shift	Temperature shift 30_to_25	-1.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2
pH	Growth at pH8 and (C) D-Glucose	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2
carbon source	L-Leucine (C)	-1.2
lb outgrowth control more dilute start	LB outgrowth control more dilute start	-1.1
pH	Growth at pH6 and (C) Trisodium citrate	-1.1
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-1.1
nitrogen source	nitrogen source nitrate 5mM	-1.0
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.0
carbon source	L-Lysine (C)	-1.0
temperature shift	Temperature shift 10_to_25	-1.0
nitrogen source	D-2-Aminobutyric (N)	-1.0
carbon source	5-Aminovaleric 10 mM (C)	-1.0
pH	pH 8	+1.0
nitrogen source	D-2-Aminobutyric (N)	+1.1
phage	P. putida PUT 7 MOI 1	+1.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+1.2
phage	P. putida Sci Big MOI 0.1	+1.4
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