Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2488
nitrogen source	nitrate (N)	-0.4
nitrogen source	no extra (N); with MOPS	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
nitrogen source	no extra (N); with MOPS	-0.3
temperature shift	Temperature shift 30_to_4	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
carbon source	D-Glucose (C)	-0.2
temperature shift	Temperature shift 30_to_21; with MOPS	-0.2
stress	Growth with Chloride 500 mM; with MOPS	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2
carbon source	Vanillin (C)	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2
phage	P. putida Missley MOI 0.1	+0.2
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.2
phage	P. putida Sci small MOI 0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2
pH	Growth at pH6 and (C) D-Glucose	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3
phage	P. putida South MOI 10	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
nitrogen source	Ammonium chloride (N)	+0.3
		remove PP_2488