Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2485
phage	P. putida Sci small MOI 0.1	-0.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5
nitrogen source	Ammonium chloride and TNT (N)	-0.4
carbon source	Oleic (C)	-0.4
carbon source	butyrate (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 2	-0.3
stress	Cholinium lysinate 10 vol%	-0.3
carbon source	D-Glucose (C)	-0.3
nitrogen source	TNT (N)	-0.3
carbon source	3-methyl-1-butanol (C)	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.3
nitrogen source	Ammonium chloride (N)	-0.3
carbon source	ferulate (C); with MOPS	-0.3
carbon source	Myristic (C)	-0.3
phage	PUT8 MOI 0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3
temperature shift	Temperature shift 10_to_30; with MOPS	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.3
phage	P. put South MOI 1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5
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