Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2481
phage	P. putida Sci small MOI 0.1	-1.1
phage	P. putida Missley MOI 0.1	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
carbon source	1,3-Butandiol (C)	-0.5
pH	Valerolactone (C) pH 6.5	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
nitrogen source	nitrogen source nitrate 5mM	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.4
carbon source	Hexanoic (C)	-0.4
phage	PUT 8 MOI 1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
temperature shift	Temperature shift 30_to_25	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
temperature shift	Temperature shift 10_to_30; with MOPS	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
temperature shift	Temperature shift 10_to_30; with MOPS	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4
temperature shift	Temperature shift 10_to_30; with MOPS	+0.5
temperature	Growth at 25C	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.5
pH	Growth at pH6 and (C) Trisodium citrate	+0.6
stress	Growth with Chloride 500 mM; with MOPS	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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