Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2480
pH pH 7 -1.0
temperature Growth at 25C -0.8
phage P. putida Sci small MOI 0.1 -0.8
carbon source ferulate (C); with MOPS -0.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6
pH Growth at pH6 and (C) Trisodium citrate -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
nitrogen source NAG (N) -0.6
nitrogen source TNT (N) -0.5
nitrogen source Ammonium chloride and TNT (N) -0.5
nitrogen source Urea (N) -0.5
nitrogen source TNT (N) -0.5
carbon source D-Glucose (C) -0.5
phage P. put South MOI 1 -0.5
nitrogen source nitrogen source nitrite 0.5mM -0.5
nitrogen source nitrate (N) -0.5
carbon source 5-Aminovaleric 10 mM (C) -0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
pH pH 9 +0.5
carbon source Delta-Dodecalactone (C) +0.5
carbon source 3-Hydroxydecanoic (C) +0.5
carbon source Valeric (C) +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
carbon source Delta-Dodecalactone (C) +0.5
temperature shift Temperature shift 30_to_25; with MOPS +0.5
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5
carbon source Valerolactone (C) +0.6
pH D-Glucose (C) pH 6.5 +0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.6
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PP_2480