Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_2453
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.5
carbon source	carbon source D-Glucose 55.5 mM	-0.5
pH	Growth at pH8 and (C) Trisodium citrate	-0.5
carbon source	L-Leucine (C)	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
carbon source	D-Lysine 10 mM (C)	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.4
carbon source	5-Aminovaleric 10 mM (C)	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
carbon source	L-Lysine (C)	-0.4
carbon source	4-Methyl-2-oxopentanoic (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	Glutaric (C)	-0.4
phage	P. putida South MOI 10	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.4
phage	PUT 8 MOI 1	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
phage	P. putida compost MOI 0.1	+0.4
toxin	pUC18_phdP1_pSU18T_docP1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7
		remove PP_2453