Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2440
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
pH	Growth at pH7 and (C) Trisodium citrate	-0.7
pH	pH 8	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6
nitrogen source	Hydantoin (N)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
pH	Growth at pH8 and (C) Trisodium citrate	-0.5
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-0.5
carbon source	Valerolactone (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
nitrogen source	nitrate (N)	-0.5
phage moi 100	Time6-phageFRS	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.5
nitrogen source	Propiolactam (N)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
carbon source	benzoic (C)	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
microaerobic m9	microaerobic M9	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5
nitrogen source	NAG (N); with MOPS	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
phage	P. putida Sci small MOI 0.1	+0.8
		remove PP_2440