Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2404
nitrogen source	Urea (N)	-1.5
pH	Growth at pH8 and (C) D-Glucose	-1.3
carbon source	Myristic (C)	-1.3
phage	P. putida Sci small MOI 0.1	-1.2
pH	Growth at pH6 and (C) D-Glucose	-1.2
nitrogen source	D-2-Aminobutyric (N)	-1.1
nitrogen source	no extra (N); with MOPS	-1.1
carbon source	Heptanoic (C)	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9
nitrogen source	Propiolactam (N)	-0.9
pH	Growth at pH7 and (C) Trisodium citrate	-0.8
carbon source	Rhamnogalacturonan - from potato (C)	-0.8
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.8
temperature shift	Temperature shift 10_to_25; with MOPS	-0.8
carbon source	D-Glucose (C) with 20AA_mix_minus_Gln	-0.8
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-0.8
carbon source	carbon source Glycerol 108.6 mM	+0.8
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.8
nitrogen source	nitrogen source nitrite 0.5mM	+0.8
nitrogen source	nitrogen source nitrite 0.5mM	+0.8
temperature shift	Temperature shift 30_to_25; with MOPS	+0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.8
carbon source	2-methyl-1-butanol (C)	+0.8
stress	R2A with Fusaric 480 ug/mL	+0.9
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.9
nitrogen source	nitrogen source nitrite 1mM	+0.9
pH	pH 7	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7
		remove PP_2404