Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2393
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
pH pH 8 -0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.5
phage P. putida Sci small MOI 0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4
pH Growth at pH6 and (C) Trisodium citrate -0.3
nitrogen source 2,6-diaminopimelic (N) -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.3
carbon source 1,3-Hexanediol (C) -0.3
nitrogen source Propiolactam (N) -0.3
nitrogen source NAG (N); with MOPS -0.3
pH pH 5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3
pH pH 7 -0.3
carbon source carbon source 4-vinylphenol 0.1 mM -0.3
no stress control Growth with no stress -0.3
carbon source Vanillin (C) -0.3
carbon source 3-Hydroxydecanoic (C) -0.3
nitrogen source Ammonium chloride (N) +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3
nitrogen source D-2-Aminobutyric (N) +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3
nitrogen source NAG (N); with MOPS +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
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PP_2393