Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2347
nitrogen source	2,6-diaminopimelic (N)	-2.3
pH	Growth at pH6 and (C) D-Glucose	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1
carbon source	Valerolactone (C)	-0.9
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.8
temperature shift	Temperature shift 30_to_4; with MOPS	-0.8
temperature shift	Temperature shift 10_to_34; with MOPS	-0.7
stress	Growth with Chloride 500 mM; with MOPS	-0.7
temperature shift	Temperature shift 30_to_10	-0.7
temperature shift	Temperature shift 10_to_30	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.7
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.7
carbon source	Crotonic (C)	-0.7
temperature	Growth at 30C	-0.7
nitrogen source	Caprolactam (N)	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.6
carbon source	DL-3-Hydroxyisobutyric (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
nitrogen source	nitrate (N)	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
temperature shift	Temperature shift 30_to_21; with MOPS	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
phage	P. putida South MOI 10	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
nitrogen source	Urea (N); with MOPS	+0.7
temperature shift	Temperature shift 30_to_25; with MOPS	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8
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