Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2246
pH	Growth at pH7 and (C) Trisodium citrate	-0.6
carbon source	4-Methyl-2-oxopentanoic (C)	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
no stress control	Growth with no stress	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
carbon source	L-Lysine 10 mM (C)	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.4
phage	P. putida South MOI 1	-0.4
carbon source	L-Phenylalanine 5 mM (C)	-0.4
carbon source	ferulate (C); with MOPS	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.4
carbon source	Butyl stearate (C)	-0.4
carbon source	butyrate (C)	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4
nitrogen source	Urea (N); with MOPS	+0.4
carbon source	D-Glucose (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
pH	pH 4	+0.4
phage	P. putida Sci small MOI 0.1	+0.4
nitrogen source	Propiolactam (N)	+0.5
stress	Growth with Chloride 500 mM; with MOPS	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
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