Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_2230
nitrogen source spermidine (N) -0.9
nitrogen source spermidine (N) -0.9
pH Growth at pH9 and (C) D-Glucose -0.8
pH Growth at pH9 and (C) D-Glucose -0.7
nitrogen source DL-2-Aminobutyric (N) -0.7
pH Growth at pH9 and (C) D-Glucose -0.6
stress LB_noSalt with Chloride 1100 mM -0.6
stress LB_noSalt with Chloride 1100 mM -0.5
pH Growth at pH9 and (C) D-Glucose -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.4
r2a control R2A control -0.4
pH Growth at pH9 and (C) D-Glucose -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4
nitrogen source nitrogen source Ammonium chloride 20mM -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4
carbon source Acetate Carbon Source (20mM) +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
carbon source acetate (C) +0.4
phage P. putida Missley MOI 0.1 +0.4
phage P. put South MOI 10 +0.5
phage P. putida PUT 7 MOI 1 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.6
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PP_2230