Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2225
carbon source	Trisodium citrate (C)	-1.6
pH	Growth at pH6 and (C) Trisodium citrate	-1.4
nitrogen source	D-2-Aminobutyric (N)	-1.4
nitrogen source	spermidine (N)	-1.0
temperature shift	Temperature shift 30_to_21; with MOPS	-1.0
nitrogen source	nitrite (N)	-1.0
nitrogen source	Ammonium chloride (N); with MOPS	-0.9
pH	Growth at pH9 and (C) D-Glucose	-0.9
nitrogen source	spermidine (N)	-0.9
nitrogen source	no extra (N)	-0.9
pH	Growth at pH9 and (C) D-Glucose	-0.9
stress	R2A with Fusaric 240 ug/mL	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.9
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8
carbon source	M9 minimal media_noCarbon with D-Glucose 10 mM; 15C	-0.8
r2a control	R2A control	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8
nitrogen source	nitrogen source nitrite 0.5mM	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-0.7
pH	Growth at pH9 and (C) D-Glucose	-0.7
nitrogen source	no extra (N); with MOPS	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
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