Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2219
nitrogen source	Propandiamine (N)	-1.5
phage	P. putida Sci small MOI 0.1	-1.0
nitrogen source	Ammonium chloride (N)	-0.9
pH	D-Glucose (C) pH 6	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8
anaerobic m9	anaerobic M9	-0.8
carbon source	3-Hydroxydecanoic (C)	-0.7
nitrogen source	nitrate (N)	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
temperature shift	Temperature shift 30_to_4; with MOPS	-0.7
carbon source	D-Fructose (C)	-0.7
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	+0.7
carbon source	Trisodium citrate (C)	+0.7
pH	pH 7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
carbon source	Valeric (C)	+0.8
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.8
phage	P. put PUT 10 MOI 10	+0.9
phage	P. put PUT 10 MOI 0.1	+0.9
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.9
phage	P. putida South MOI 10	+0.9
carbon source	ferulate (C); with MOPS	+0.9
phage	PUT8 MOI 0.1	+0.9
temperature shift	Temperature shift 30_to_25	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+1.0
nitrogen source	D-2-Aminobutyric (N)	+1.1
pH	pH 6	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.4
		remove PP_2219