Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2215
carbon source 2-Methylbutanoic (C) -5.3
carbon source 2-methyl-1-butanol (C) -5.3
carbon source L-Isoleucine (C) -5.2
carbon source 2-Methylbutanoic (C) -5.2
carbon source L-Isoleucine (C) -5.1
nitrogen source D-2-Aminobutyric (N) -4.4
carbon source 2-methyl-1-butanol (C) -4.3
nitrogen source L-Isoleucine (N) -3.8
nitrogen source D-2-Aminobutyric (N) -3.8
nitrogen source L-Isoleucine (N) -3.3
nitrogen source DL-2-Aminobutyric (N) -2.9
temperature Growth at 30C; with MOPS -2.8
nitrogen source DL-2-Aminobutyric (N) -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.5
carbon source 3-methyl-2-oxopentanoic (C) -2.4
carbon source 3-methyl-2-oxopentanoic (C) -2.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.2
phage P. putida Sci small MOI 0.1 -2.1
micoeukaryotes C.elegans, mixed culture-1 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.7
carbon source Beta-alanine (C) -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.6
nitrogen source Urea (N) -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.5
pH Growth at pH6 and (C) Trisodium citrate -1.4
carbon source Valeric (C) +2.1
carbon source Valeric (C) +2.1
carbon source Valeric (C) +3.7
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PP_2215