Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2186
phage P. putida Sci small MOI 0.1 -2.4
phage P. putida Sci Big MOI 0.1 -2.4
carbon source L-Phenylalanine 5 mM (C) -1.6
phage PUT 8 MOI 1 -1.6
carbon source pyruvate (C) -1.2
carbon source Tween 20 (C) -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -1.1
carbon source Delta-Dodecalactone (C) -1.1
pH Growth at pH6 and (C) Trisodium citrate -1.1
nitrogen source nitrogen source nitrite 0.5mM -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0
phage PUT8 MOI 10 -1.0
micoeukaryotes Dictyostellum sp.mixed culture-1 -1.0
carbon source p-Coumaric (C) -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9
nitrogen source NAG (N); with MOPS -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9
carbon source BC Lignin Sorghum 10 vol% (C) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9
carbon source carbon source Bisabolol 45 mM +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.9
carbon source carbon source 4-vinylphenol 0.1 mM +0.9
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.9
stress Cholinium glutamate 10 vol% +1.0
temperature shift Temperature shift 30_to_21; with MOPS +1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0
carbon source carbon source 2-Deoxy-D-glucose 10 mM +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.2
carbon source carbon source Glycerol 108.6 mM +1.4
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PP_2186