Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2179
nitrogen source NAG (N); with MOPS -1.1
temperature shift Temperature shift 30_to_10; with MOPS -0.8
stress R2A with Fusaric 480 ug/mL -0.7
temperature shift Temperature shift 30_to_10 -0.7
phage P. put South MOI 0.1 -0.7
temperature shift Temperature shift 10_to_30 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.6
nitrogen source Propandiamine (N) -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
stress Growth with Chloride 500 mM; with MOPS -0.6
nitrogen source nitrate (N) -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
nitrogen source 1,6-Hexanediamine (N) -0.5
nitrogen source 1,6-Hexanediamine (N) -0.5
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.5
pH pH 9 +0.5
nitrogen source nitrogen source nitrite 0.5mM +0.5
carbon source D-Glucose (C); with MOPS +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6
carbon source Trisodium citrate (C) +0.7
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.7
nitrogen source Caprolactam (N) +1.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 +1.0
nitrogen source Caprolactam (N) +1.0
nitrogen source Caprolactam (N) +1.6
nitrogen source Caprolactam (N) +1.8
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PP_2179