Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2146
nitrogen source D-2-Aminobutyric (N) -0.7
nitrogen source D-2-Aminobutyric (N) -0.7
phage P. put South MOI 10 -0.5
phage P. put South MOI 1 -0.5
carbon source 3-methyl-1-butanol (C) -0.4
carbon source Vanillin (C) -0.4
carbon source Tween 20 (C) +0.4
phage P. putida Sci small MOI 0.1 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4
nitrogen source 2,6-diaminopimelic (N) +0.4
phage P. putida Sci Big MOI 0.1 +0.4
nitrogen source 6-aminocaproic (N) +0.4
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.4
nitrogen source 6-aminocaproic (N) +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
carbon source carbon source Glycerol 108.6 mM +0.4
nitrogen source L-Methionine (N) +0.5
nitrogen source Propiolactam (N) +0.5
pH pH 4 +0.5
carbon source butyrate (C) +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5
pH pH 8 +0.5
pH pH 5 +0.5
carbon source carbon source Bisabolol 45 mM +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
nitrogen source 2,6-diaminopimelic (N) +0.6
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PP_2146