Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2073
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.5
carbon source	carbon source D-Glucose 55.5 mM	-2.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.3
pH	Growth at pH6 and (C) Trisodium citrate	-2.1
phage	P. putida Sci Big MOI 0.1	-2.1
r2a control	R2A control	-1.8
phage	PUT 8 MOI 1	-1.5
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.5
carbon source	Trisodium citrate (C)	-1.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.4
stress	R2A with Fusaric 240 ug/mL	-1.4
pH	Growth at pH8 and (C) D-Glucose	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3
stress	Growth with Chloride 500 mM	-1.2
nitrogen source	nitrite (N)	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-1.1
temperature shift	Temperature shift 30_to_10; with MOPS	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-1.1
carbon source	ferulate (C); with MOPS	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0
carbon source	2,3-Butanediol (C)	-1.0
nitrogen source	Caprolactam (N)	-1.0
carbon source	D-Glucose (C); with MOPS	-1.0
nitrogen source	Urea (N)	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1
phage	P. putida Sci small MOI 0.1	+1.2
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