Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2071
phage P. putida Sci small MOI 0.1 -2.6
phage P. putida PUT 7 MOI 1 -1.2
pH D-Glucose (C) pH 6 -0.9
carbon source Nonanoic (C) -0.9
nitrogen source nitrate (N) -0.8
stress Butanol 0.6 vol% -0.8
nitrogen source NAG (N); with MOPS -0.7
carbon source D-Glucose (C) -0.7
nitrogen source D-2-Aminobutyric (N) -0.7
carbon source DL-3-Hydroxybutyric (C) -0.7
carbon source acetate (C) -0.7
nitrogen source 2,6-diaminopimelic (N) -0.7
nitrogen source D-2-Aminobutyric (N) -0.7
nitrogen source NAG (N); with MOPS -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.6
pH Growth at pH9 and (C) D-Glucose +0.6
phage P. putida South MOI 10 +0.6
temperature shift Temperature shift 10_to_25; with MOPS +0.6
nitrogen source nitrate (N) +0.6
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.7
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8
micoeukaryotes Tetrahymena sp., Mixed culture-2 +1.0
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PP_2071