Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2049
carbon source	1,4-Butanediol (C)	-7.3
carbon source	1,4-Butanediol (C)	-4.2
pH	Growth at pH6 and (C) D-Glucose	-1.5
phage	P. putida Sci small MOI 0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.9
temperature shift	Temperature shift 30_to_25	-0.8
carbon source	acetate (C)	-0.7
pH	D-Glucose (C) pH 7	-0.7
temperature shift	Temperature shift 30_to_25	-0.7
nitrogen source	Ammonium chloride (N)	-0.7
phage	PUT8 MOI 10	-0.6
carbon source	L-Leucine (C)	-0.6
temperature shift	Temperature shift 30_to_21; with MOPS	-0.6
phage	P. putida Missley MOI 0.1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.6
carbon source	D-Glucose (C)	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.6
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.6
phage	P. put PUT 10 MOI 0.1	+0.6
pH	Growth at pH7 and (C) D-Glucose	+0.6
carbon source	Delta-Decalactone (C)	+0.7
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
carbon source	4-Methyl-2-oxopentanoic (C)	+0.7
nitrogen source	Ammonium chloride (N)	+0.7
stress	R2A with Fusaric 480 ug/mL	+0.7
stress	R2A with Fusaric 240 ug/mL	+0.8
carbon source	Delta-Decalactone (C)	+0.9
		remove PP_2049