Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2039
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.4
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	-0.4
carbon source	Trisodium citrate (C)	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.3
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.3
temperature shift	Temperature shift 30_to_25	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3
carbon source	Vanillin (C)	+0.3
carbon source	butyrate (C)	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
carbon source	Delta-Decalactone (C)	+0.4
pH	Growth at pH7 and (C) D-Glucose	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.4
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.5
pH	pH 6	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5
		remove PP_2039