Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2016
phage	P. putida PUT 7 MOI 1	-2.3
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-2.0
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-1.9
carbon source	carbon source D-Glucose 55.5 mM	-1.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-1.4
carbon source	ferulate (C); with MOPS	-1.2
nitrogen source	D-2-Aminobutyric (N)	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.1
temperature shift	Temperature shift 30_to_4	-1.0
pH	Growth at pH8 and (C) D-Glucose	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
pH	D-Glucose (C) pH 6.5	-1.0
nitrogen source	no extra (N); with MOPS	-1.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-1.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-1.0
carbon source	carbon source Bisabolene 48.9 mM	-1.0
pH	Valerolactone (C) pH 6.5	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	-0.9
carbon source	D-Glucose (C); with MOPS	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.9
pH	pH 7	-0.9
carbon source	Tween 20 (C)	-0.9
carbon source	D-Glucose (C)	-0.9
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.9
nitrogen source	Propiolactam (N)	+0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.4
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