Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_2009
phage P. putida Sci small MOI 0.1 -1.6
phage P. putida PUT 7 MOI 1 -1.3
phage P. putida Sci small MOI 0.1 -0.9
carbon source Valerolactone (C) -0.6
carbon source D-Glucose (C) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
temperature shift Temperature shift 10_to_25; with MOPS -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5
temperature Growth at 30C; with MOPS -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
pH Growth at pH7 and (C) D-Glucose -0.5
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.5
stress Butanol 0.6 vol% -0.5
phage P. putida PUT10 MOI 0.1 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5
nitrogen source nitrogen source nitrite 1mM +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5
carbon source Myristic (C) +0.5
nitrogen source Propandiamine (N) +0.5
carbon source Heptanoic (C) +0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
carbon source Nonanoic (C) +0.5
carbon source 3-Methyl-2-Oxobutanoic Acid (C) +0.5
carbon source 1,3-Butandiol (C) +0.6
temperature shift Temperature shift 30_to_25; with MOPS +0.6
carbon source L-Leucine (C) +0.7
pH Valerolactone (C) pH 6.5 +0.7
pH pH 6 +0.8
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PP_2009