Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2008
phage	P. putida Missley MOI 0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.4
carbon source	Valerolactone (C)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
phage	P. put South MOI 10	-0.4
stress	R2A with Fusaric 240 ug/mL	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
microaerobic m9	microaerobic M9	-0.4
stress	Cholinium lysinate 10 vol%	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
temperature shift	Temperature shift 10_to_30; with MOPS	-0.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3
carbon source	4-Methyl-2-oxopentanoic (C)	-0.3
nitrogen source	Urea (N); with MOPS	-0.3
pH	Valerolactone (C) pH 6.5	+0.3
temperature shift	Temperature shift 30_to_21	+0.3
temperature shift	Temperature shift 30_to_21	+0.3
temperature shift	Temperature shift 10_to_30; with MOPS	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	4-Aminobutyric 10 mM (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4
nitrogen source	NAG (N); with MOPS	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
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