Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1987
pH	Growth at pH6 and (C) D-Glucose	-5.2
carbon source	D-Glucose (C)	-3.0
pH	Growth at pH7 and (C) Trisodium citrate	-2.5
pH	Growth at pH6 and (C) Trisodium citrate	-2.1
nitrogen source	2,6-diaminopimelic (N)	-2.1
nitrogen source	Ammonium chloride (N); with MOPS	-1.7
stress	Growth with Chloride 500 mM; with MOPS	-1.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-1.6
stress	R2A with Fusaric 480 ug/mL	-1.6
stress	R2A with Fusaric 120 ug/mL	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
stress	Growth with Chloride 200 mM	-1.4
stress	3-methyl-1-butanol 0.4 vol%	-1.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2
nitrogen source	DL-3-Aminoisobutyric (N)	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2
temperature shift	Temperature shift 30_to_25	-1.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-1.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.2
temperature shift	Temperature shift 30_to_10; with MOPS	-1.2
pH	Growth at pH7 and (C) Trisodium citrate	-1.2
stress	Growth with Chloride 500 mM	-1.1
stress	Growth with Chloride 500 mM; with MOPS	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-1.1
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-1.1
stress	3-methyl-3-butenol (commercial) 0.25 vol%	+1.1
carbon source	ferulate (C); with MOPS	+1.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+1.2
phage	P. putida Missley MOI 0.1	+1.4
nitrogen source	D-2-Aminobutyric (N)	+1.7
		remove PP_1987