Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1981
carbon source carbon source 4-vinylphenol 0.01 mM -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1
carbon source L-Phenylalanine 5 mM (C) -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8
pH Growth at pH7 and (C) Trisodium citrate -0.8
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.7
nitrogen source nitrate (N) -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7
temperature shift Temperature shift 30_to_25; with MOPS -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7
nitrogen source nitrite (N) -0.7
stress NaCl stress 250 mM -0.6
temperature shift Temperature shift 30_to_4; with MOPS -0.6
phage P. putida PUT 7 MOI 1 +0.6
phage P. put PUT 10 MOI 1 +0.6
nitrogen source D-2-Aminobutyric (N) +0.7
nitrogen source 2,6-diaminopimelic (N) +0.7
phage P. putida PUT10 MOI 10 +0.7
temperature Growth at 30C; with MOPS +0.7
phage P. putida PUT10 MOI 0.1 +0.7
carbon source D-Glucose (C) with 20AA_mix_minus_Gly +0.7
carbon source Trisodium citrate (C) +0.7
nitrogen source 2,6-diaminopimelic (N) +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9
phage PUT 8 MOI 1 +0.9
stress Growth with Chloride 500 mM; with MOPS +0.9
temperature Growth at 25C +1.0
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PP_1981