Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_1979
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-4.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-2.2
temperature shift	Temperature shift 10_to_30; with MOPS	-2.0
carbon source	acetate (C)	-1.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.9
nitrogen source	2,6-diaminopimelic (N)	-1.9
nitrogen source	nitrate (N)	-1.7
carbon source	Trisodium citrate (C)	-1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
carbon source	Myristic (C)	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.3
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-1.3
temperature	Growth at 25C; with MOPS	-1.2
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-1.2
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	-1.1
carbon source	DL-3-Hydroxyisobutyric (C)	-1.1
phage	P. put PUT 10 MOI 10	-1.1
temperature	Growth at 25C	-1.0
temperature shift	Temperature shift 10_to_34; with MOPS	-1.0
pH	Growth at pH6 and (C) D-Glucose	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+1.0
stress	R2A with Fusaric 240 ug/mL	+1.0
nitrogen source	Propandiamine (N)	+1.2
phage	P. putida South MOI 10	+1.2
carbon source	Delta-Decalactone (C)	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4
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