Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1972
carbon source	5-Aminovaleric 10 mM (C)	-1.4
carbon source	L-Glutamic (C)	-1.2
carbon source	L-Glutamine (C)	-1.1
carbon source	ferulate (C); with MOPS	-1.0
micoeukaryotes	C.elegans, mixed culture-2	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.9
nitrogen source	nitrogen source nitrite 1mM	-0.9
carbon source	5-Aminovaleric 10 mM (C)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
carbon source	L-Glutamic (C)	-0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	-0.7
carbon source	L-Glutamic (C)	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	-0.7
carbon source	L-Valine (C)	-0.7
carbon source	L-Valine (C)	-0.7
nitrogen source	nitrate (N)	-0.7
nitrogen source	D-2-Aminobutyric (N)	-0.7
carbon source	L-Valine (C)	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.7
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.7
phage	P. put South MOI 0.1	+0.6
phage	P. put South MOI 1	+0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.7
phage	P. putida South MOI 10	+0.7
phage	P. putida South MOI 1	+0.7
phage	P. put PUT 10 MOI 10	+0.7
phage	P. put South MOI 0.1	+0.7
		remove PP_1972