Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1955
carbon source	L-Leucine (C)	-0.8
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.7
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.7
pH	pH 4	-0.7
pH	pH 5	-0.6
pH	Growth at pH7 and (C) Trisodium citrate	-0.5
carbon source	4-Aminobutyric 10 mM (C)	-0.5
carbon source	L-Alanine (C)	-0.5
pH	pH 8	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.5
carbon source	Octanoic (C)	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4
carbon source	DL-2-Aminoadipic 10 mM (C)	+0.4
carbon source	Delta-Decalactone (C)	+0.4
phage	P. putida Sci small MOI 0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
carbon source	ferulate (C); with MOPS	+0.5
nitrogen source	Imidazole (N)	+0.5
carbon source	ferulate (C); with MOPS	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
phage	P. putida Sci Big MOI 0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
phage	P. putida PUT 7 MOI 1	+0.9
phage	P. putida Missley MOI 0.1	+1.1
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