Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1866
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -2.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.7
nitrogen source L-Phenylalanine (N) -1.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.6
nitrogen source L-Phenylalanine (N) -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8
nitrogen source 2,6-diaminopimelic (N) -0.7
temperature shift Temperature shift 30_to_21; with MOPS -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6
phage P. putida Sci small MOI 0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6
carbon source Acetate Carbon Source (20mM) -0.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6
carbon source carbon source 4-vinylphenol 0.1 mM -0.5
carbon source 4-Hydroxyvalerate (C) (40mM) -0.5
stress Growth with Chloride 200 mM; with MOPS -0.5
carbon source Myristic (C) -0.5
carbon source carbon source D-Glucose 55.5 mM -0.5
phage P. putida Sci small MOI 0.1 -0.5
carbon source Nonanoic (C) -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
temperature Growth at 25C -0.5
nitrogen source Urea (N); with MOPS -0.5
phage PUT8 MOI 0.1 -0.5
nitrogen source D-2-Aminobutyric (N) -0.5
pH Growth at pH6 and (C) Trisodium citrate +0.5
stress R2A with Fusaric 480 ug/mL +0.5
stress R2A with Fusaric 480 ug/mL +0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7
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PP_1866