Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_1852
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5
phage P. putida Sci small MOI 0.1 -0.5
phage P. putida Sci Big MOI 0.1 -0.4
stress Growth with Chloride 200 mM; with MOPS -0.4
stress R2A with Fusaric 480 ug/mL -0.3
nitrogen source DL-3-Aminoisobutyric (N) -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3
nitrogen source 2,6-diaminopimelic (N) -0.3
stress R2A with Fusaric 240 ug/mL -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3
phage P. putida PUT 7 MOI 1 -0.3
pH Growth at pH6 and (C) Trisodium citrate -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.3
carbon source rac-3-Hydroxypentanoic Acid (C) -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3
pH Growth at pH6 and (C) Trisodium citrate +0.3
carbon source L-Lysine (C) +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3
temperature shift Temperature shift 10_to_25 +0.3
phage PUT 8 MOI 1 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3
pH Growth at pH6 and (C) Trisodium citrate +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3
carbon source L-Arginine (C) +0.4
carbon source Tween 20 (C) +0.4
nitrogen source Urea (N); with MOPS +0.4
no stress control Growth with no stress +0.4
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PP_1852